Top 10 archive

Top 10 · Wednesday, 11 November 2026

  1. 1
    Theoretical & Computational Chemistry Graphical abstract not licensed for reuse · View at publisher ↗

    Research in pharmaceutical sciences ·

    Comprehensive structure-based virtual screening of natural products enabling the discovery of new activators of SIRT1.

    Arman Bigham, Kourosh Eslami, Hajar Sirous, Morteza Pourfarzam, Simone Brogi, Vincenzo Calderone

    Abstract

    BACKGROUND AND PURPOSE: Sirtuin 1 (SIRT1), a class III histone deacetylase, regulates key signaling pathways associated with health and longevity. Age-related decline in SIRT1 contributes to metabolic, inflammatory, cardiovascular, and neurodegenerative diseases. Although SIRT1-activating compounds (STACs) represent a promising therapeutic strategy, currently available activators show limited potency. This study aimed to identify novel natural SIRT1 activators using hierarchical virtual screening… Read full abstract

    Why this paper?
    • Freshness 61% (18 h old)
    • Chemistry relevance 100%
    • Novelty language used by the authors: discovery of, novel
    • Methodological evidence mentioned: crystal structure
    • Detailed abstract available
    • Open access

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  2. 2
    Biochemistry No graphical abstract available · View at publisher ↗

    bioRxiv ·

    Programmable amide bond formation using de novo ligases

    S. Salike, T. Fluegel, M. Gantz, S. S. Moroz, A. C. Hunt … D. Baker (26 authors)

    Abstract

    Amide bond formation is of central importance in the chemical industry, underpinning the synthesis of small bioactive molecules, macrocycles, peptides and their conjugates. Conventional methods of amide synthesis rely on stoichiometric coupling agents and costly protecting group manipulations. While biocatalysis can alleviate some of these challenges, enzymes typically operate across a narrow range of substrates and their adaptation to new… Read full abstract

    Why this paper?
    • Freshness 94% (2 h old)
    • Chemistry relevance 100%
    • Novelty language used by the authors: first
    • Methodological evidence mentioned: crystal structures
    • Detailed abstract available
    • Open access

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  3. 3
    Electrochemistry No graphical abstract available · View at publisher ↗

    Light, science & applications ·

    Electroactive fiber optics for real-time, multiscale probing of ion transport and interfacial chemistry.

    Tatjana Šafarik, Frédéric Kanoufi, Médéric Loyez, Hadrien Fasseaux, David Aymé-Perrot … Jean-Marie Tarascon (10 authors)

    Abstract

    Understanding charge dynamics at electrochemical interfaces is essential for establishing the basic mechanisms that underpin the functionality of energy storage devices and ultimately improve their performance, safety and longevity. However, direct, time-resolved access to such information remains challenging due to the complex and convoluted conditions necessary for charge transfer between materials and phases. Here, we report an electroactive fiber-optic device… Read full abstract

    Why this paper?
    • Freshness 25% (50 h old)
    • Chemistry relevance 100%
    • Novelty language used by the authors: novel, first
    • Methodological evidence mentioned: operando, mechanistic studies
    • Detailed abstract available
    • Open access

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  4. 4
    Catalysis No graphical abstract available · View at publisher ↗

    ACS nano ·

    Oxygen-Promoted Dehydrogenation on Size-Selected Cu-Pd Pentamer Clusters for Low-Temperature Hydrogen Release from Cyclic Hydrocarbons.

    Mykhailo Vaidulych, Yonghyuk Lee, Federico Loi, Petr Vitek, Michael Vorochta … Stefan Vajda (23 authors)

    Abstract

    Despite extensive studies on cycloalkane and cycloalkene dehydrogenation for liquid organic hydrogen carrier applications, the mechanisms governing selective H2 release under mild conditions remain poorly understood. Here, subnanometer CuxPdy pentamer clusters supported on ZrO2 represent a highly active and selective class of low-temperature dehydrogenation catalysts. Pd5 exhibits the highest benzene and molecular H2 formation rates from dehydrogenation of cyclohexene, followed… Read full abstract

    Why this paper?
    • Freshness 48% (26 h old)
    • Chemistry relevance 100%
    • Novelty language used by the authors: first
    • Methodological evidence mentioned: kinetic analysis, in situ, dft
    • Detailed abstract available

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  5. 5
    Medicinal & Pharmaceutical Chemistry No graphical abstract available · View at publisher ↗

    European journal of medicinal chemistry ·

    Identification of Indostat as a selective HDAC6 inhibitor for reducing inflammatory stimuli triggered by a synthetic analogue of viral double-stranded RNA in hippocampal neurons.

    Anna Fontana, Gabriele Carullo, Giovanna Panzeca, Sabrina Morelli, Antonella Piscioneri … Giuseppe Campiani (24 authors)

    Abstract

    Histone deacetylase 6 (HDAC6) has emerged as a key regulator of inflammatory and antiviral responses, making it an attractive target for the development of selective immunomodulatory agents. In this study, we designed, synthesized, and biologically evaluated a novel series of indolizine-based HDAC6 inhibitors (5a-m), exploiting the indolizine scaffold as a new cap group within the canonical HDAC pharmacophore. Most compounds… Read full abstract

    Why this paper?
    • Freshness 85% (6 h old)
    • Chemistry relevance 84%
    • Novelty language used by the authors: novel
    • Methodological evidence mentioned: in vitro, mechanistic studies
    • Detailed abstract available

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  6. 6
    AI & Machine Learning in Chemistry No graphical abstract available · View at publisher ↗

    Journal of chemical theory and computation ·

    Convolutional Kernel-Embedded E(3)-Equivariant Networks (KEN): Overcoming Architectural Rigidity in Machine Learning Interatomic Potentials.

    Jha Gautam

    Abstract

    Machine learning interatomic potentials (MLIPs) have emerged as scalable alternatives to first-principles methods such as density functional theory (DFT). Among them, E(3)-equivariant graph neural networks (GNNs) like PACE and MACE are highly accurate but structurally rigid, limiting the incorporation of rich, multichannel electronic descriptors. We introduce convolutional kernel-embedded E(3)-equivariant networks (KEN), a hybrid architecture that combines the local environmental extraction… Read full abstract

    Why this paper?
    • Freshness 48% (26 h old)
    • Chemistry relevance 100%
    • Novelty language used by the authors: first
    • Methodological evidence mentioned: density functional, dft
    • Detailed abstract available

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  7. 7
    Analytical Chemistry No graphical abstract available · View at publisher ↗

    Journal of chromatography. B, Analytical technologies in the biomedical and life sciences ·

    Solvent-dependent hemolytic activity and phytochemical profiling of Humulus lupulus L. extracts: Integrating antioxidant assays, DFT analysis, and molecular docking.

    Dilara Ülger Özbek, Emre Can Buluz, Savaş Kaya

    Abstract

    Humulus lupulus L. is a phytochemically rich medicinal plant with antioxidant and pharmacological potential; however, the direct hemolytic effects of extracts obtained using different solvents remain poorly characterized. This study integrated experimental and computational approaches to evaluate the phytochemical composition, antioxidant potential, elemental profile, and hemolytic activity of aqueous, methanolic, ethanolic, and acetone extracts of H. lupulus L. Total phenolic… Read full abstract

    Why this paper?
    • Freshness 85% (6 h old)
    • Chemistry relevance 100%
    • Methodological evidence mentioned: dft, density functional
    • Detailed abstract available

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  8. 8
    Nanotechnology Graphical abstract not licensed for reuse · View at publisher ↗

    Beilstein journal of nanotechnology ·

    Biocompatible nanoscale contrast agents for MRI and CT scans: current progress and clinical potential.

    Mohammad Mehdi Gravandi, Pershia Davoodi Karsalari, Ali Hajihashemi, Shokouh Sadeghizadeh, Mohammad Rasoul Golabchi … Niayesh Mohebbi (8 authors)

    Abstract

    Conventional contrast agents for magnetic resonance imaging (MRI) and computed tomography (CT) have long served as the backbone of diagnostic imaging. Yet, their well-recognized limitations, including nephrogenic systemic fibrosis and progressive gadolinium deposition with Gd-based chelates, contrast-induced nephropathy with iodinated agents, and serious hypersensitivity reactions with approved iron oxide formulations, continue to drive the search for safer alternatives. Nanoparticle-based contrast… Read full abstract

    Why this paper?
    • Freshness 61% (18 h old)
    • Chemistry relevance 100%
    • Methodological evidence mentioned: x-ray, in vivo
    • Detailed abstract available
    • Open access

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  9. 9
    Drug Discovery No graphical abstract available · View at publisher ↗

    Bioinformatics (Oxford, England) ·

    DTBNet: Multimodal 3D Geometric Perception with Hierarchical Attention for Robust Drug-Target Interaction and Binding Affinity Prediction.

    Yuxiao Wei, Qi Zhang, Xuezhong Zhou

    Abstract

    MOTIVATION: Accurate prediction of drug-target interactions (DTIs) and binding affinity (DTA) constitutes a core challenge in accelerating drug discovery. While existing computational methods have made progress, most models struggle to capture critical physicochemical interactions in 3D space due to reliance on 1D sequences or 2D graph structures, and exhibit limited generalization in cold-start scenarios. This study proposes DTBNet, a unified… Read full abstract

    Why this paper?
    • Freshness 48% (26 h old)
    • Chemistry relevance 86%
    • Novelty language used by the authors: first, novel
    • Methodological evidence mentioned: benchmark
    • Detailed abstract available

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗
  10. 10
    Geochemistry Graphical abstract not licensed for reuse · View at publisher ↗

    Frontiers in microbiology ·

    Bacterial interfaces and surface chemistry shape hydroxyapatite mineral architecture during microbially induced calcium phosphate precipitation.

    Pelina Toprak, Carlos Rodriguez-Navarro, Abhijit Mukherjee, Allan Pring, Navdeep K Dhami

    Abstract

    Calcium phosphate biomineralization plays a crucial role in the formation of geological deposits, biological materials, and environmental remediation. While microorganisms are known to influence calcium phosphate precipitation, the relative contributions of bacterial cell surfaces and extracellular polymeric substances (EPS) remain poorly defined. This study presents the first microscale investigation of the distinct roles of Gram-positive and Gram-negative bacterial cells and… Read full abstract

    Why this paper?
    • Freshness 61% (18 h old)
    • Chemistry relevance 86%
    • Novelty language used by the authors: first
    • Methodological evidence mentioned: x-ray
    • Detailed abstract available
    • Open access

    Automated heuristic for discovery; not an assessment of scientific quality. How ranking works

    DOI ↗